J3_7AFD_003
3D structure
- PDB id
- 7AFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state A (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7AFD|1|1|A|975, 7AFD|1|1|G|976, 7AFD|1|1|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFD_003 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0838
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7AFD|1|1|U|955
7AFD|1|1|U|956
7AFD|1|1|U|957
7AFD|1|1|A|958
7AFD|1|1|A|959
7AFD|1|1|U|960
7AFD|1|1|U|961
7AFD|1|1|C|962
*
7AFD|1|1|G|973
7AFD|1|1|A|974
7AFD|1|1|A|975
7AFD|1|1|G|976
7AFD|1|1|A|977
7AFD|1|1|A|978
7AFD|1|1|C|979
7AFD|1|1|C|980
7AFD|1|1|U|981
7AFD|1|1|U|982
7AFD|1|1|A|983
7AFD|1|1|C|984
*
7AFD|1|1|G|1221
7AFD|1|1|G|1222
7AFD|1|1|C|1223
7AFD|1|1|U|1224
7AFD|1|1|A|1225
Current chains
- Chain 1
- 16SrRNA of the head domain (residue C931 to G1386)
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
Coloring options: