J3_7AFH_011
3D structure
- PDB id
- 7AFH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state C (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 7AFH|1|1|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFH_011 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1299
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7AFH|1|1|U|1116
7AFH|1|1|A|1117
7AFH|1|1|U|1118
*
7AFH|1|1|A|1155
7AFH|1|1|G|1156
7AFH|1|1|A|1157
7AFH|1|1|C|1158
7AFH|1|1|U|1159
7AFH|1|1|G|1160
7AFH|1|1|C|1161
*
7AFH|1|1|G|1175
7AFH|1|1|A|1176
7AFH|1|1|G|1177
7AFH|1|1|G|1178
7AFH|1|1|A|1179
7AFH|1|1|A|1180
7AFH|1|1|G|1181
7AFH|1|1|G|1182
7AFH|1|1|U|1183
7AFH|1|1|G|1184
Current chains
- Chain 1
- 16SrRNA (head domain of the 30S ribosome)
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
Coloring options: