J3_7AFK_002
3D structure
- PDB id
- 7AFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state D (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFK_002 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.1675
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7AFK|1|1|U|943
7AFK|1|1|G|944
7AFK|1|1|G|945
7AFK|1|1|A|946
*
7AFK|1|1|U|1235
7AFK|1|1|A|1236
7AFK|1|1|C|1237
*
7AFK|1|1|G|1337
7AFK|1|1|G|1338
7AFK|1|1|A|1339
7AFK|1|1|A|1340
Current chains
- Chain 1
- 16SrRNA (head domain of the 30S ribosome)
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S13
Coloring options: