J3_7AFK_004

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUUG*CAGGUG*CCCUUACG

Length

18 nucleotides

Bulged bases

7AFK|1|1|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AFK|1|1|C|990
7AFK|1|1|U|991
7AFK|1|1|U|992
7AFK|1|1|G|993
*
7AFK|1|1|C|1045
7AFK|1|1|A|1046
7AFK|1|1|G|1047
7AFK|1|1|G|1048
7AFK|1|1|U|1049
7AFK|1|1|G|1050
*
7AFK|1|1|C|1208
7AFK|1|1|C|1209
7AFK|1|1|C|1210
7AFK|1|1|U|1211
7AFK|1|1|U|1212
7AFK|1|1|A|1213
7AFK|1|1|C|1214
7AFK|1|1|G|1215

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain N

30S ribosomal protein S14