J3_7AFK_013
3D structure
- PDB id
- 7AFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state D (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFK_013 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.1398
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
7AFK|1|1|C|936
7AFK|1|1|A|937
7AFK|1|1|A|938
7AFK|1|1|G|939
*
7AFK|1|1|C|1344
7AFK|1|1|U|1345
7AFK|1|1|A|1346
7AFK|1|1|G|1347
7AFK|1|1|U|1348
7AFK|1|1|A|1349
7AFK|1|1|A|1350
*
7AFK|1|1|U|1372
7AFK|1|1|G|1373
7AFK|1|1|A|1374
7AFK|1|1|A|1375
7AFK|1|1|U|1376
7AFK|1|1|A|1377
7AFK|1|1|C|1378
7AFK|1|1|G|1379
Current chains
- Chain 1
- 16SrRNA (head domain of the 30S ribosome)
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: