J3_7AJT_001

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7AJT|1|D3|U|45, 7AJT|1|D3|A|47, 7AJT|1|D3|C|433, 7AJT|1|D3|A|437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|A|41
7AJT|1|D3|G|42
7AJT|1|D3|A|43
7AJT|1|D3|U|44
7AJT|1|D3|U|45
7AJT|1|D3|A|46
7AJT|1|D3|A|47
7AJT|1|D3|G|48
*
7AJT|1|D3|C|431
7AJT|1|D3|G|432
7AJT|1|D3|C|433
7AJT|1|D3|G|434
7AJT|1|D3|C|435
7AJT|1|D3|A|436
7AJT|1|D3|A|437
7AJT|1|D3|A|438
7AJT|1|D3|U|439
*
7AJT|1|D3|A|464
7AJT|1|D3|G|465
7AJT|1|D3|U|466

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A