J3_7AJT_006

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUG

Length

16 nucleotides

Bulged bases

7AJT|1|D3|A|1217, 7AJT|1|D3|G|1218

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|C|1215
7AJT|1|D3|C|1216
7AJT|1|D3|A|1217
7AJT|1|D3|G|1218
7AJT|1|D3|A|1219
7AJT|1|D3|C|1220
*
7AJT|1|D3|G|1263
7AJT|1|D3|G|1264
7AJT|1|D3|G|1265
7AJT|1|D3|U|1266
7AJT|1|D3|G|1267
7AJT|1|D3|G|1268
*
7AJT|1|D3|C|1441
7AJT|1|D3|U|1442
7AJT|1|D3|U|1443
7AJT|1|D3|G|1448

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JF

Ribosomal RNA small subunit methyltransferase NEP1

Chain JH

Essential nuclear protein 1

Chain UB

Nucleolar complex protein 14