J3_7AJT_008

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAUCAGUAUU*AAGACUAACUACUGC*GCAUUUG

Length

32 nucleotides

Bulged bases

7AJT|1|D3|C|934, 7AJT|1|D3|C|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJT|1|D3|C|880
7AJT|1|D3|A|881
7AJT|1|D3|U|882
7AJT|1|D3|C|883
7AJT|1|D3|A|884
7AJT|1|D3|G|885
7AJT|1|D3|U|886
7AJT|1|D3|A|887
7AJT|1|D3|U|888
7AJT|1|D3|U|889
*
7AJT|1|D3|A|923
7AJT|1|D3|A|924
7AJT|1|D3|G|925
7AJT|1|D3|A|926
7AJT|1|D3|C|927
7AJT|1|D3|U|928
7AJT|1|D3|A|929
7AJT|1|D3|A|930
7AJT|1|D3|C|931
7AJT|1|D3|U|932
7AJT|1|D3|A|933
7AJT|1|D3|C|934
7AJT|1|D3|U|935
7AJT|1|D3|G|936
7AJT|1|D3|C|937
*
7AJT|1|D3|G|942
7AJT|1|D3|C|943
7AJT|1|D3|A|944
7AJT|1|D3|U|945
7AJT|1|D3|U|946
7AJT|1|D3|U|947
7AJT|1|D3|G|948

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DN

40S ribosomal protein S13

Chain DO

40S ribosomal protein S14-A

Chain JN

Protein FAF1

Chain JO

KRR1 small subunit processome component