J3_7AJU_005

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UUG*CCGCC

Length

10 nucleotides

Bulged bases

7AJU|1|D3|U|1628, 7AJU|1|D3|C|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AJU|1|D3|G|1150
7AJU|1|D3|A|1151
*
7AJU|1|D3|U|1627
7AJU|1|D3|U|1628
7AJU|1|D3|G|1629
*
7AJU|1|D3|C|1636
7AJU|1|D3|C|1637
7AJU|1|D3|G|1638
7AJU|1|D3|C|1639
7AJU|1|D3|C|1640

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain UA

Periodic tryptophan protein 2

Chain UB

Nucleolar complex protein 14

Chain UL

U3 small nucleolar RNA-associated protein 12

Chain UM

U3 small nucleolar RNA-associated protein 13