3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GA*UUG*CCGCC
Length
10 nucleotides
Bulged bases
7AJU|1|D3|U|1628, 7AJU|1|D3|C|1639
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7AJU|1|D3|G|1150
7AJU|1|D3|A|1151
*
7AJU|1|D3|U|1627
7AJU|1|D3|U|1628
7AJU|1|D3|G|1629
*
7AJU|1|D3|C|1636
7AJU|1|D3|C|1637
7AJU|1|D3|G|1638
7AJU|1|D3|C|1639
7AJU|1|D3|C|1640

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CK
U3 small nucleolar RNA-associated protein MPP10
Chain UA
Periodic tryptophan protein 2
Chain UB
Nucleolar complex protein 14
Chain UL
U3 small nucleolar RNA-associated protein 12
Chain UM
U3 small nucleolar RNA-associated protein 13

Coloring options:

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