J3_7AJU_009
3D structure
- PDB id
- 7AJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCAAAGAUUAAG*CGCGCAAAU*AGUGACAA
- Length
- 29 nucleotides
- Bulged bases
- 7AJU|1|D3|U|45, 7AJU|1|D3|A|47, 7AJU|1|D3|C|433, 7AJU|1|D3|G|434, 7AJU|1|D3|C|435, 7AJU|1|D3|A|436, 7AJU|1|D3|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7AJU|1|D3|U|37
7AJU|1|D3|C|38
7AJU|1|D3|A|39
7AJU|1|D3|A|40
7AJU|1|D3|A|41
7AJU|1|D3|G|42
7AJU|1|D3|A|43
7AJU|1|D3|U|44
7AJU|1|D3|U|45
7AJU|1|D3|A|46
7AJU|1|D3|A|47
7AJU|1|D3|G|48
*
7AJU|1|D3|C|431
7AJU|1|D3|G|432
7AJU|1|D3|C|433
7AJU|1|D3|G|434
7AJU|1|D3|C|435
7AJU|1|D3|A|436
7AJU|1|D3|A|437
7AJU|1|D3|A|438
7AJU|1|D3|U|439
*
7AJU|1|D3|A|464
7AJU|1|D3|G|465
7AJU|1|D3|U|466
7AJU|1|D3|G|467
7AJU|1|D3|A|468
7AJU|1|D3|C|469
7AJU|1|D3|A|470
7AJU|1|D3|A|471
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DE
- 40S ribosomal protein S4-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain DY
- 40S ribosomal protein S24-A
- Chain JD
- Probable ATP-dependent RNA helicase DHR1
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