3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UCAAAGAUUAAG*CGCGCAAAU*AGUGACAA
Length
29 nucleotides
Bulged bases
7AJU|1|D3|U|45, 7AJU|1|D3|A|47, 7AJU|1|D3|C|433, 7AJU|1|D3|G|434, 7AJU|1|D3|C|435, 7AJU|1|D3|A|436, 7AJU|1|D3|A|468
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7AJU|1|D3|U|37
7AJU|1|D3|C|38
7AJU|1|D3|A|39
7AJU|1|D3|A|40
7AJU|1|D3|A|41
7AJU|1|D3|G|42
7AJU|1|D3|A|43
7AJU|1|D3|U|44
7AJU|1|D3|U|45
7AJU|1|D3|A|46
7AJU|1|D3|A|47
7AJU|1|D3|G|48
*
7AJU|1|D3|C|431
7AJU|1|D3|G|432
7AJU|1|D3|C|433
7AJU|1|D3|G|434
7AJU|1|D3|C|435
7AJU|1|D3|A|436
7AJU|1|D3|A|437
7AJU|1|D3|A|438
7AJU|1|D3|U|439
*
7AJU|1|D3|A|464
7AJU|1|D3|G|465
7AJU|1|D3|U|466
7AJU|1|D3|G|467
7AJU|1|D3|A|468
7AJU|1|D3|C|469
7AJU|1|D3|A|470
7AJU|1|D3|A|471

Current chains

Chain D3
18S rRNA

Nearby chains

Chain CL
Ribosome biogenesis protein BMS1
Chain DE
40S ribosomal protein S4-A
Chain DJ
40S ribosomal protein S9-A
Chain DX
40S ribosomal protein S23-A
Chain DY
40S ribosomal protein S24-A
Chain JD
Probable ATP-dependent RNA helicase DHR1

Coloring options:

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