J3_7AQD_003

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7AQD|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.2485

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7AQD|1|A|C|272
7AQD|1|A|A|273
7AQD|1|A|A|274
7AQD|1|A|A|275
7AQD|1|A|C|276
*
7AQD|1|A|G|295
7AQD|1|A|G|296
7AQD|1|A|G|297
7AQD|1|A|U|298
7AQD|1|A|U|299
7AQD|1|A|G|300
7AQD|1|A|U|301
7AQD|1|A|A|302
*
7AQD|1|A|U|416
7AQD|1|A|G|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains