J3_7AQD_004

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7AQD|1|A|U|733, 7AQD|1|A|G|839, 7AQD|1|A|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1106

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7AQD|1|A|U|730
7AQD|1|A|G|731
7AQD|1|A|A|732
7AQD|1|A|U|733
7AQD|1|A|C|734
7AQD|1|A|U|735
7AQD|1|A|A|736
*
7AQD|1|A|U|820
7AQD|1|A|A|821
7AQD|1|A|G|822
*
7AQD|1|A|C|838
7AQD|1|A|G|839
7AQD|1|A|A|840
7AQD|1|A|A|841

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34