J3_7AQD_010

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_010 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1125

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7AQD|1|A|U|2120
7AQD|1|A|U|2121
7AQD|1|A|G|2122
*
7AQD|1|A|C|2225
7AQD|1|A|U|2226
7AQD|1|A|A|2227
7AQD|1|A|A|2228
7AQD|1|A|C|2229
7AQD|1|A|C|2230
*
7AQD|1|A|G|2251
7AQD|1|A|A|2252
7AQD|1|A|G|2253
7AQD|1|A|A|2254
7AQD|1|A|C|2255
7AQD|1|A|A|2256
7AQD|1|A|G|2257

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28