J3_7AQD_021

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AQD_021 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.0765

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7AQD|1|A|G|1470
7AQD|1|A|G|1471
7AQD|1|A|G|1472
7AQD|1|A|A|1473
7AQD|1|A|C|1474
7AQD|1|A|G|1475
*
7AQD|1|A|C|1612
7AQD|1|A|C|1613
*
7AQD|1|A|G|1616
7AQD|1|A|A|1617
7AQD|1|A|A|1618
7AQD|1|A|A|1619
7AQD|1|A|A|1620
7AQD|1|A|G|1621
7AQD|1|A|C|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2