J3_7AS8_008

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7AS8|1|A|A|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AS8_008 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1371

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7AS8|1|A|C|1344
7AS8|1|A|U|1345
7AS8|1|A|A|1346
7AS8|1|A|A|1347
7AS8|1|A|G|1348
*
7AS8|1|A|C|1650
7AS8|1|A|G|1651
7AS8|1|A|C|1652
7AS8|1|A|A|1653
7AS8|1|A|A|1654
7AS8|1|A|A|1655
7AS8|1|A|C|1656
*
7AS8|1|A|G|1665
7AS8|1|A|U|1666
7AS8|1|A|A|1667
7AS8|1|A|G|1668

Current chains

Chain A

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L34