J3_7AS8_009

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AS8_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1363

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7AS8|1|A|U|1383
7AS8|1|A|C|1384
7AS8|1|A|G|1385
7AS8|1|A|G|1386
7AS8|1|A|G|1387
7AS8|1|A|A|1388
7AS8|1|A|C|1389
*
7AS8|1|A|G|1420
7AS8|1|A|A|1421
7AS8|1|A|C|1422
7AS8|1|A|A|1423
7AS8|1|A|A|1424
*
7AS8|1|A|U|1441
7AS8|1|A|A|1442

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L23