J3_7AS8_012

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7AS8|1|A|A|2547, 7AS8|1|A|U|2548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AS8_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0971

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7AS8|1|A|C|2546
7AS8|1|A|A|2547
7AS8|1|A|U|2548
7AS8|1|A|C|2549
*
7AS8|1|A|G|2574
7AS8|1|A|U|2575
7AS8|1|A|U|2576
*
7AS8|1|A|A|2590
7AS8|1|A|U|2591
7AS8|1|A|U|2592
7AS8|1|A|A|2593
7AS8|1|A|A|2594
7AS8|1|A|A|2595
7AS8|1|A|G|2596

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L14