3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AS8_018 not in the Motif Atlas
Homologous match to J3_9DFE_013
Geometric discrepancy: 0.0896
The information below is about J3_9DFE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7AS8|1|A|G|1470
7AS8|1|A|G|1471
7AS8|1|A|G|1472
7AS8|1|A|A|1473
7AS8|1|A|C|1474
7AS8|1|A|G|1475
*
7AS8|1|A|C|1612
7AS8|1|A|C|1613
*
7AS8|1|A|G|1616
7AS8|1|A|A|1617
7AS8|1|A|A|1618
7AS8|1|A|A|1619
7AS8|1|A|A|1620
7AS8|1|A|G|1621
7AS8|1|A|C|1622

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L2

Coloring options:


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