J3_7ASM_005

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASM_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0704

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7ASM|1|A|C|743
7ASM|1|A|A|744
7ASM|1|A|G|745
*
7ASM|1|A|C|777
7ASM|1|A|G|778
7ASM|1|A|A|779
7ASM|1|A|A|780
7ASM|1|A|C|781
*
7ASM|1|A|G|805
7ASM|1|A|A|806
7ASM|1|A|U|807
7ASM|1|A|G|808

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2