J3_7ASM_007

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

7ASM|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASM_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.2671

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

7ASM|1|A|C|1342
7ASM|1|A|U|1343
7ASM|1|A|A|1344
7ASM|1|A|A|1345
7ASM|1|A|G|1346
*
7ASM|1|A|C|1649
7ASM|1|A|G|1650
7ASM|1|A|C|1651
7ASM|1|A|A|1652
7ASM|1|A|A|1653
7ASM|1|A|A|1654
7ASM|1|A|C|1655
*
7ASM|1|A|G|1664
7ASM|1|A|U|1665
7ASM|1|A|A|1666
7ASM|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34