J3_7ASM_012

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7ASM|1|A|A|2545, 7ASM|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASM_012 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0935

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7ASM|1|A|C|2544
7ASM|1|A|A|2545
7ASM|1|A|U|2546
7ASM|1|A|C|2547
*
7ASM|1|A|G|2572
7ASM|1|A|U|2573
7ASM|1|A|U|2574
*
7ASM|1|A|A|2588
7ASM|1|A|U|2589
7ASM|1|A|U|2590
7ASM|1|A|A|2591
7ASM|1|A|A|2592
7ASM|1|A|A|2593
7ASM|1|A|G|2594

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L14