J3_7ASM_017

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAAU*AAUCAAAGAA*UGUAG

Length

20 nucleotides

Bulged bases

7ASM|1|A|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASM_017 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.0845

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7ASM|1|A|C|340
7ASM|1|A|G|341
7ASM|1|A|A|342
7ASM|1|A|A|343
7ASM|1|A|U|344
*
7ASM|1|A|A|359
7ASM|1|A|A|360
7ASM|1|A|U|361
7ASM|1|A|C|362
7ASM|1|A|A|363
7ASM|1|A|A|364
7ASM|1|A|A|365
7ASM|1|A|G|366
7ASM|1|A|A|367
7ASM|1|A|A|368
*
7ASM|1|A|U|380
7ASM|1|A|G|381
7ASM|1|A|U|382
7ASM|1|A|A|383
7ASM|1|A|G|384

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L24