J3_7ASM_019

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASM_019 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0782

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7ASM|1|A|G|1468
7ASM|1|A|G|1469
7ASM|1|A|G|1470
7ASM|1|A|A|1471
7ASM|1|A|C|1472
7ASM|1|A|G|1473
*
7ASM|1|A|C|1611
7ASM|1|A|C|1612
*
7ASM|1|A|G|1615
7ASM|1|A|A|1616
7ASM|1|A|A|1617
7ASM|1|A|A|1618
7ASM|1|A|A|1619
7ASM|1|A|G|1620
7ASM|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2