J3_7ASN_005

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

7ASN|1|A|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASN_005 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.3004

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ASN|1|A|C|1335
7ASN|1|A|G|1336
7ASN|1|A|A|1337
7ASN|1|A|U|1338
7ASN|1|A|U|1339
7ASN|1|A|G|1340
*
7ASN|1|A|C|1669
7ASN|1|A|A|1670
7ASN|1|A|A|1671
*
7ASN|1|A|U|1683
7ASN|1|A|A|1684
7ASN|1|A|A|1685
7ASN|1|A|G|1686

Current chains

Chain A

23S

Nearby chains