J3_7ASO_008

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7ASO|1|Y|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASO_008 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.2093

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7ASO|1|Y|C|272
7ASO|1|Y|A|273
7ASO|1|Y|A|274
7ASO|1|Y|A|275
7ASO|1|Y|C|276
*
7ASO|1|Y|G|295
7ASO|1|Y|G|296
7ASO|1|Y|G|297
7ASO|1|Y|U|298
7ASO|1|Y|U|299
7ASO|1|Y|G|300
7ASO|1|Y|U|301
7ASO|1|Y|A|302
*
7ASO|1|Y|U|415
7ASO|1|Y|G|416

Current chains

Chain Y

23S

Nearby chains