J3_7ASO_009

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7ASO|1|Y|U|731, 7ASO|1|Y|G|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASO_009 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1272

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7ASO|1|Y|U|728
7ASO|1|Y|G|729
7ASO|1|Y|A|730
7ASO|1|Y|U|731
7ASO|1|Y|C|732
7ASO|1|Y|U|733
7ASO|1|Y|A|734
*
7ASO|1|Y|U|818
7ASO|1|Y|A|819
7ASO|1|Y|G|820
*
7ASO|1|Y|C|836
7ASO|1|Y|G|837
7ASO|1|Y|A|838
7ASO|1|Y|A|839

Current chains

Chain Y

23S

Nearby chains

Chain i

50S ribosomal protein L34