J3_7ASO_011

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

7ASO|1|Y|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASO_011 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.2954

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ASO|1|Y|C|1335
7ASO|1|Y|G|1336
7ASO|1|Y|A|1337
7ASO|1|Y|U|1338
7ASO|1|Y|U|1339
7ASO|1|Y|G|1340
*
7ASO|1|Y|C|1669
7ASO|1|Y|A|1670
7ASO|1|Y|A|1671
*
7ASO|1|Y|U|1683
7ASO|1|Y|A|1684
7ASO|1|Y|A|1685
7ASO|1|Y|G|1686

Current chains

Chain Y

23S

Nearby chains