J3_7ASO_013

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUGC*GCGGCCGUAACGGUCCUAAGGUAG*CGAAAG

Length

34 nucleotides

Bulged bases

7ASO|1|Y|C|1936, 7ASO|1|Y|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ASO|1|Y|C|1860
7ASO|1|Y|U|1861
7ASO|1|Y|G|1862
7ASO|1|Y|C|1863
*
7ASO|1|Y|G|1931
7ASO|1|Y|C|1932
7ASO|1|Y|G|1933
7ASO|1|Y|G|1934
7ASO|1|Y|C|1935
7ASO|1|Y|C|1936
7ASO|1|Y|G|1937
7ASO|1|Y|U|1938
7ASO|1|Y|A|1945
7ASO|1|Y|A|1946
7ASO|1|Y|C|1947
7ASO|1|Y|G|1948
7ASO|1|Y|G|1949
7ASO|1|Y|U|1950
7ASO|1|Y|C|1951
7ASO|1|Y|C|1952
7ASO|1|Y|U|1953
7ASO|1|Y|A|1954
7ASO|1|Y|A|1955
7ASO|1|Y|G|1956
7ASO|1|Y|G|1957
7ASO|1|Y|U|1958
7ASO|1|Y|A|1959
7ASO|1|Y|G|1960
*
7ASO|1|Y|C|1994
7ASO|1|Y|G|1995
7ASO|1|Y|A|1996
7ASO|1|Y|A|1997
7ASO|1|Y|A|1998
7ASO|1|Y|G|1999

Current chains

Chain Y

23S

Nearby chains

Chain X

Small subunit ribosomal RNA; SSU rRNA