J3_7ASO_018

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCUGGC*GCGUGAGUGAUGAAGGUCUAUCGUAAAACUCUGUUAUUAGGGAGAACAUAUGUCACAUCUUGACGUACCUAAUCAGAAAGCCACGGCUAACU*AGGUGGCAAGC

Length

109 nucleotides

Bulged bases

7ASO|1|X|U|413, 7ASO|1|X|U|437, 7ASO|1|X|U|447, 7ASO|1|X|U|450, 7ASO|1|X|G|455, 7ASO|1|X|C|481, 7ASO|1|X|C|486, 7ASO|1|X|C|497, 7ASO|1|X|U|498, 7ASO|1|X|C|512, 7ASO|1|X|U|516, 7ASO|1|X|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ASO|1|X|G|36
7ASO|1|X|C|37
7ASO|1|X|U|38
7ASO|1|X|G|39
7ASO|1|X|G|40
7ASO|1|X|C|41
*
7ASO|1|X|G|410
7ASO|1|X|C|411
7ASO|1|X|G|412
7ASO|1|X|U|413
7ASO|1|X|G|414
7ASO|1|X|A|415
7ASO|1|X|G|416
7ASO|1|X|U|417
7ASO|1|X|G|418
7ASO|1|X|A|419
7ASO|1|X|U|420
7ASO|1|X|G|421
7ASO|1|X|A|422
7ASO|1|X|A|423
7ASO|1|X|G|424
7ASO|1|X|G|425
7ASO|1|X|U|426
7ASO|1|X|C|427
7ASO|1|X|U|428
7ASO|1|X|A|433
7ASO|1|X|U|434
7ASO|1|X|C|435
7ASO|1|X|G|436
7ASO|1|X|U|437
7ASO|1|X|A|438
7ASO|1|X|A|439
7ASO|1|X|A|440
7ASO|1|X|A|441
7ASO|1|X|C|442
7ASO|1|X|U|443
7ASO|1|X|C|444
7ASO|1|X|U|445
7ASO|1|X|G|446
7ASO|1|X|U|447
7ASO|1|X|U|448
7ASO|1|X|A|449
7ASO|1|X|U|450
7ASO|1|X|U|451
7ASO|1|X|A|452
7ASO|1|X|G|453
7ASO|1|X|G|454
7ASO|1|X|G|455
7ASO|1|X|A|457
7ASO|1|X|G|458
7ASO|1|X|A|459
7ASO|1|X|A|460
7ASO|1|X|C|461
7ASO|1|X|A|462
7ASO|1|X|U|463
7ASO|1|X|A|464
7ASO|1|X|U|465
7ASO|1|X|G|466
7ASO|1|X|U|467
7ASO|1|X|C|481
7ASO|1|X|A|482
7ASO|1|X|C|483
7ASO|1|X|A|484
7ASO|1|X|U|485
7ASO|1|X|C|486
7ASO|1|X|U|487
7ASO|1|X|U|488
7ASO|1|X|G|489
7ASO|1|X|A|490
7ASO|1|X|C|491
7ASO|1|X|G|492
7ASO|1|X|U|494
7ASO|1|X|A|495
7ASO|1|X|C|496
7ASO|1|X|C|497
7ASO|1|X|U|498
7ASO|1|X|A|499
7ASO|1|X|A|500
7ASO|1|X|U|501
7ASO|1|X|C|502
7ASO|1|X|A|503
7ASO|1|X|G|504
7ASO|1|X|A|505
7ASO|1|X|A|506
7ASO|1|X|A|507
7ASO|1|X|G|508
7ASO|1|X|C|509
7ASO|1|X|C|510
7ASO|1|X|A|511
7ASO|1|X|C|512
7ASO|1|X|G|513
7ASO|1|X|G|514
7ASO|1|X|C|515
7ASO|1|X|U|516
7ASO|1|X|A|517
7ASO|1|X|A|518
7ASO|1|X|C|519
7ASO|1|X|U|520
*
7ASO|1|X|A|547
7ASO|1|X|G|548
7ASO|1|X|G|549
7ASO|1|X|U|550
7ASO|1|X|G|551
7ASO|1|X|G|552
7ASO|1|X|C|553
7ASO|1|X|A|554
7ASO|1|X|A|555
7ASO|1|X|G|556
7ASO|1|X|C|557

Current chains

Chain X

16S

Nearby chains

Chain 3

30S ribosomal protein S12

Chain 7

30S ribosomal protein S16

Chain l

30S ribosomal protein S4