J3_7ASP_009

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

7ASP|1|Y|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASP_009 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.2646

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7ASP|1|Y|C|1335
7ASP|1|Y|G|1336
7ASP|1|Y|A|1337
7ASP|1|Y|U|1338
7ASP|1|Y|U|1339
7ASP|1|Y|G|1340
*
7ASP|1|Y|C|1669
7ASP|1|Y|A|1670
7ASP|1|Y|A|1671
*
7ASP|1|Y|U|1683
7ASP|1|Y|A|1684
7ASP|1|Y|A|1685
7ASP|1|Y|G|1686

Current chains

Chain Y

23S rRNA

Nearby chains