3D structure

PDB id
7ASP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S after 50 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.86 Å

Loop

Sequence
UAAG*CGCAAAC*GUA
Length
14 nucleotides
Bulged bases
7ASP|1|Y|C|1651, 7ASP|1|Y|A|1653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ASP_010 not in the Motif Atlas
Homologous match to J3_5J7L_042
Geometric discrepancy: 0.3358
The information below is about J3_5J7L_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

7ASP|1|Y|U|1343
7ASP|1|Y|A|1344
7ASP|1|Y|A|1345
7ASP|1|Y|G|1346
*
7ASP|1|Y|C|1649
7ASP|1|Y|G|1650
7ASP|1|Y|C|1651
7ASP|1|Y|A|1652
7ASP|1|Y|A|1653
7ASP|1|Y|A|1654
7ASP|1|Y|C|1655
*
7ASP|1|Y|G|1664
7ASP|1|Y|U|1665
7ASP|1|Y|A|1666

Current chains

Chain Y
23S rRNA

Nearby chains

Chain B
50S ribosomal protein L34

Coloring options:


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