J3_7AZO_014

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZO_014 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1016

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AZO|1|16SB|G|692
7AZO|1|16SB|C|693
*
7AZO|1|16SB|G|1002
7AZO|1|16SB|G|1003
7AZO|1|16SB|A|1004
7AZO|1|16SB|A|1005
7AZO|1|16SB|U|1006
7AZO|1|16SB|C|1007
7AZO|1|16SB|U|1008
*
7AZO|1|16SB|A|1034
7AZO|1|16SB|G|1035
7AZO|1|16SB|C|1036

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S16B

30S ribosomal protein S16