J3_7AZO_072
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7AZO|1|23SB|A|2403, 7AZO|1|23SB|U|2405, 7AZO|1|23SB|A|2441
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AZO_072 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1383
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7AZO|1|23SB|G|2297
7AZO|1|23SB|C|2298
7AZO|1|23SB|C|2299
*
7AZO|1|23SB|G|2399
7AZO|1|23SB|C|2400
7AZO|1|23SB|C|2401
7AZO|1|23SB|U|2402
7AZO|1|23SB|A|2403
7AZO|1|23SB|G|2404
7AZO|1|23SB|U|2405
7AZO|1|23SB|G|2406
7AZO|1|23SB|A|2407
7AZO|1|23SB|A|2408
7AZO|1|23SB|C|2409
7AZO|1|23SB|C|2410
*
7AZO|1|23SB|G|2436
7AZO|1|23SB|A|2437
7AZO|1|23SB|U|2438
7AZO|1|23SB|C|2439
7AZO|1|23SB|A|2440
7AZO|1|23SB|A|2441
7AZO|1|23SB|C|2442
Current chains
- Chain 23SB
- 23S rRNA
Nearby chains
- Chain ESIB
- Transfer RNA; tRNA
- Chain L15B
- 50S ribosomal protein L15
- Chain L27B
- 50S ribosomal protein L27
- Chain L28B
- 50S ribosomal protein L28
- Chain L33B
- 50S ribosomal protein L33
- Chain L35B
- 50S ribosomal protein L35
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