J3_7AZO_073
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCCAUAG*CG*UCGG
- Length
- 13 nucleotides
- Bulged bases
- 7AZO|1|5SB|U|16, 7AZO|1|5SB|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AZO_073 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3517
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7AZO|1|5SB|C|12
7AZO|1|5SB|C|13
7AZO|1|5SB|C|14
7AZO|1|5SB|A|15
7AZO|1|5SB|U|16
7AZO|1|5SB|A|17
7AZO|1|5SB|G|18
*
7AZO|1|5SB|C|70
7AZO|1|5SB|G|71
*
7AZO|1|5SB|U|110
7AZO|1|5SB|C|111
7AZO|1|5SB|G|112
7AZO|1|5SB|G|113
Current chains
- Chain 5SB
- 5S rRNA
Nearby chains
- Chain 23SB
- Large subunit ribosomal RNA; LSU rRNA
- Chain L18B
- 50S ribosomal protein L18
- Chain L25B
- 50S ribosomal protein L25
- Chain L27B
- 50S ribosomal protein L27
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