Loop J3_7AZO

3D structure

PDB id: 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: GA(4SU)AGCUC*GAGCAGG*CCGU(G7M)UCCUUGG(5MU)(PSU)CGAUUCCGAGUC
Length: 41 nucleotides
Bulged bases: 7AZO|1|ASIA|U|47
QA status: Modified nucleotides: 4SU, G7M, 5MU, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7AZO|1|ASIA|G|6
7AZO|1|ASIA|A|7
7AZO|1|ASIA|4SU|8
7AZO|1|ASIA|A|9
7AZO|1|ASIA|G|10
7AZO|1|ASIA|C|11
7AZO|1|ASIA|U|12
7AZO|1|ASIA|C|13
*
7AZO|1|ASIA|G|22
7AZO|1|ASIA|A|23
7AZO|1|ASIA|G|24
7AZO|1|ASIA|C|25
7AZO|1|ASIA|A|26
7AZO|1|ASIA|G|27
7AZO|1|ASIA|G|28
*
7AZO|1|ASIA|C|42
7AZO|1|ASIA|C|43
7AZO|1|ASIA|G|44
7AZO|1|ASIA|U|45
7AZO|1|ASIA|G7M|46
7AZO|1|ASIA|U|47
7AZO|1|ASIA|C|48
7AZO|1|ASIA|C|49
7AZO|1|ASIA|U|50
7AZO|1|ASIA|U|51
7AZO|1|ASIA|G|52
7AZO|1|ASIA|G|53
7AZO|1|ASIA|5MU|54
7AZO|1|ASIA|PSU|55
7AZO|1|ASIA|C|56
7AZO|1|ASIA|G|57
7AZO|1|ASIA|A|58
7AZO|1|ASIA|U|59
7AZO|1|ASIA|U|60
7AZO|1|ASIA|C|61
7AZO|1|ASIA|C|62
7AZO|1|ASIA|G|63
7AZO|1|ASIA|A|64
7AZO|1|ASIA|G|65
7AZO|1|ASIA|U|66
7AZO|1|ASIA|C|67

Current chains

Chain ASIA: Phe-tRNA

Nearby chains

Chain 16SA: Small subunit ribosomal RNA; SSU rRNA
Chain 23SA: Large subunit ribosomal RNA; LSU rRNA
Chain L16A: 50S ribosomal protein L16
Chain L25A: 50S ribosomal protein L25
Chain PSIA: Transfer RNA; tRNA

J3_7AZO_074