J3_7AZS_005

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1023

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|16SA|C|1559
7AZS|1|16SA|A|1560
7AZS|1|16SA|A|1561
7AZS|1|16SA|G|1562
*
7AZS|1|16SA|C|1971
7AZS|1|16SA|U|1972
7AZS|1|16SA|A|1973
7AZS|1|16SA|G|1974
7AZS|1|16SA|U|1975
7AZS|1|16SA|A|1976
7AZS|1|16SA|A|1977
*
7AZS|1|16SA|U|2000
7AZS|1|16SA|G|2001
7AZS|1|16SA|A|2002
7AZS|1|16SA|A|2003
7AZS|1|16SA|U|2004
7AZS|1|16SA|A|2005
7AZS|1|16SA|C|2006
7AZS|1|16SA|G|2007

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain ESIA

Transfer RNA; tRNA

Chain S7A

30S ribosomal protein S7

Chain S9A

30S ribosomal protein S9