J3_7AZS_012

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

7AZS|1|16SA|A|1810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_012 not in the Motif Atlas

Geometric match to J3_4LFB_018

Geometric discrepancy: 0.16

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7AZS|1|16SA|C|1744
7AZS|1|16SA|G|1745
7AZS|1|16SA|C|1746
*
7AZS|1|16SA|G|1783
7AZS|1|16SA|G|1784
7AZS|1|16SA|A|1785
7AZS|1|16SA|C|1786
7AZS|1|16SA|U|1787
7AZS|1|16SA|G|1788
7AZS|1|16SA|C|1789
*
7AZS|1|16SA|G|1802
7AZS|1|16SA|A|1803
7AZS|1|16SA|G|1804
7AZS|1|16SA|G|1805
7AZS|1|16SA|A|1806
7AZS|1|16SA|A|1807
7AZS|1|16SA|G|1808
7AZS|1|16SA|G|1809
7AZS|1|16SA|A|1810
7AZS|1|16SA|G|1811

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S10A

30S ribosomal protein S10

Chain S14A

30S ribosomal protein S14 type Z

Chain S2A

30S ribosomal protein S2

Chain S9A

30S ribosomal protein S9