J3_7AZS_030

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

7AZS|1|23SA|G|735, 7AZS|1|23SA|G|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_030 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.1169

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7AZS|1|23SA|C|732
7AZS|1|23SA|G|733
7AZS|1|23SA|A|734
7AZS|1|23SA|G|735
7AZS|1|23SA|C|736
7AZS|1|23SA|U|737
7AZS|1|23SA|A|738
*
7AZS|1|23SA|U|822
7AZS|1|23SA|A|823
7AZS|1|23SA|G|824
*
7AZS|1|23SA|C|840
7AZS|1|23SA|G|841
7AZS|1|23SA|A|842
7AZS|1|23SA|G|843

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L2A

50S ribosomal protein L2

Chain L34A

50S ribosomal protein L34