J3_7AZS_035

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_035 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1264

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7AZS|1|23SA|G|1393
7AZS|1|23SA|C|1394
7AZS|1|23SA|G|1395
7AZS|1|23SA|G|1396
7AZS|1|23SA|G|1397
7AZS|1|23SA|A|1398
7AZS|1|23SA|C|1399
*
7AZS|1|23SA|G|1430
7AZS|1|23SA|G|1431
7AZS|1|23SA|C|1432
7AZS|1|23SA|A|1433
7AZS|1|23SA|G|1434
*
7AZS|1|23SA|C|1451
7AZS|1|23SA|C|1452

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L23A

50S ribosomal protein L23

Chain L34A

50S ribosomal protein L34