J3_7AZS_044

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_044 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.0513

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7AZS|1|23SB|C|747
7AZS|1|23SB|A|748
7AZS|1|23SB|G|749
*
7AZS|1|23SB|C|781
7AZS|1|23SB|G|782
7AZS|1|23SB|A|783
7AZS|1|23SB|A|784
7AZS|1|23SB|C|785
*
7AZS|1|23SB|G|809
7AZS|1|23SB|A|810
7AZS|1|23SB|U|811
7AZS|1|23SB|G|812

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L2B

50S ribosomal protein L2