J3_7AZS_046

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

7AZS|1|23SB|A|1658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_046 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.0662

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7AZS|1|23SB|C|1355
7AZS|1|23SB|A|1356
7AZS|1|23SB|A|1357
7AZS|1|23SB|G|1358
*
7AZS|1|23SB|C|1654
7AZS|1|23SB|G|1655
7AZS|1|23SB|C|1656
7AZS|1|23SB|A|1657
7AZS|1|23SB|A|1658
7AZS|1|23SB|A|1659
7AZS|1|23SB|C|1660
*
7AZS|1|23SB|G|1669
7AZS|1|23SB|U|1670
7AZS|1|23SB|G|1671

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L34B

50S ribosomal protein L34