Motif J3_44702.1 Version J3_44702.1 of this group appears in releases 3.87 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-9 | 4-8 | 4-12 | 6-7 | 9-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8VTW_005 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | C | 1605 | G | 1606 | C | 1607 | A | 1608 | A | 1610 | C | 1611 | * | G | 1620 | U | 1621 | G | 1622 | * | C | 1306 | A | 1307 | A | 1308 | G | 1309 | cWW | tSH | tHH | tHW | tWW | cWW | cWW |
| 2 | J3_7A0S_007 | 7A0S | 0.1144 | 1 | X | LSU rRNA | C | 1621 | G | 1622 | C | 1623 | A | 1624 | A | 1626 | C | 1627 | * | G | 1636 | U | 1637 | G | 1638 | * | C | 1319 | A | 1320 | A | 1321 | G | 1322 | cWW | tSH | ntHH | tHW | ntWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CGCAAAC*GUG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*GCAAA*U | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.06 | Max 0.11
Coloring options: