J3_7AZS_058

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_058 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1168

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7AZS|1|16SA|U|1701
7AZS|1|16SA|G|1702
*
7AZS|1|16SA|U|1711
7AZS|1|16SA|G|1712
7AZS|1|16SA|U|1713
7AZS|1|16SA|U|1714
*
7AZS|1|16SA|G|1727
7AZS|1|16SA|C|1728
7AZS|1|16SA|A|1729
7AZS|1|16SA|A|1730

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S2A

30S ribosomal protein S2

Chain S5A

30S ribosomal protein S5