J3_7AZS_060

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

7AZS|1|16SB|C|694, 7AZS|1|16SB|A|696, 7AZS|1|16SB|A|697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_060 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.072

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7AZS|1|16SB|G|692
7AZS|1|16SB|C|693
7AZS|1|16SB|C|694
7AZS|1|16SB|U|695
7AZS|1|16SB|A|696
7AZS|1|16SB|A|697
7AZS|1|16SB|G|698
*
7AZS|1|16SB|U|1000
7AZS|1|16SB|A|1001
7AZS|1|16SB|G|1002
7AZS|1|16SB|G|1003
7AZS|1|16SB|A|1004
7AZS|1|16SB|A|1005
7AZS|1|16SB|U|1006
7AZS|1|16SB|C|1007
7AZS|1|16SB|U|1008
*
7AZS|1|16SB|A|1034
7AZS|1|16SB|G|1035
7AZS|1|16SB|C|1036

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S16B

30S ribosomal protein S16