J3_7AZS_067

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_067 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0661

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7AZS|1|23SA|G|1473
7AZS|1|23SA|G|1474
7AZS|1|23SA|G|1475
7AZS|1|23SA|A|1476
7AZS|1|23SA|C|1477
7AZS|1|23SA|G|1478
*
7AZS|1|23SA|C|1614
7AZS|1|23SA|C|1615
*
7AZS|1|23SA|G|1618
7AZS|1|23SA|A|1619
7AZS|1|23SA|A|1620
7AZS|1|23SA|A|1621
7AZS|1|23SA|A|1622
7AZS|1|23SA|G|1623
7AZS|1|23SA|C|1624

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L2A

50S ribosomal protein L2