J3_7AZY_005

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

7AZY|1|E|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZY_005 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1071

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7AZY|1|E|A|828
7AZY|1|E|U|829
7AZY|1|E|A|830
7AZY|1|E|G|831
*
7AZY|1|E|C|863
7AZY|1|E|G|864
7AZY|1|E|U|865
7AZY|1|E|A|866
7AZY|1|E|G|867
*
7AZY|1|E|U|892
7AZY|1|E|C|893
7AZY|1|E|G|894
7AZY|1|E|A|895
7AZY|1|E|A|896
7AZY|1|E|U|897

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L34-A

Chain H

60S ribosomal protein L19-A

Chain x

60S ribosomal protein L2-A