J3_7AZY_007

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

7AZY|1|E|U|1258, 7AZY|1|E|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZY_007 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.5539

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7AZY|1|E|G|1230
7AZY|1|E|A|1231
7AZY|1|E|C|1232
*
7AZY|1|E|G|1256
7AZY|1|E|C|1257
7AZY|1|E|U|1258
7AZY|1|E|A|1259
7AZY|1|E|A|1260
7AZY|1|E|G|1261
7AZY|1|E|G|1262
*
7AZY|1|E|C|1277
7AZY|1|E|A|1278
7AZY|1|E|C|1279

Current chains

Chain E

25S ribosomal RNA

Nearby chains