3D structure

PDB id
7AZY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Context-specific inhibition of eukaryotic translation by macrolide antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
2.877 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
7AZY|1|E|A|398, 7AZY|1|E|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AZY_022 not in the Motif Atlas
Homologous match to J3_8C3A_049
Geometric discrepancy: 0.0963
The information below is about J3_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91149.1
Basepair signature
cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

7AZY|1|E|A|369
7AZY|1|E|U|370
7AZY|1|E|G|371
7AZY|1|E|A|372
7AZY|1|E|A|373
7AZY|1|E|A|374
7AZY|1|E|A|375
7AZY|1|E|G|376
7AZY|1|E|A|377
7AZY|1|E|A|378
7AZY|1|E|C|379
*
7AZY|1|E|G|390
7AZY|1|E|A|391
7AZY|1|E|G|392
7AZY|1|E|U|393
7AZY|1|E|G|394
7AZY|1|E|A|395
7AZY|1|E|A|396
7AZY|1|E|A|397
7AZY|1|E|A|398
7AZY|1|E|A|399
7AZY|1|E|G|400
7AZY|1|E|U|401
7AZY|1|E|A|402
7AZY|1|E|C|403
7AZY|1|E|G|404
*
7AZY|1|G|C|19
7AZY|1|G|U|20

Current chains

Chain E
25S ribosomal RNA
Chain G
5.8S ribosomal RNA

Nearby chains

Chain M
60S ribosomal protein L39
Chain p
60S ribosomal protein L4-A
Chain q
60S ribosomal protein L26-A
Chain y
60S ribosomal protein L17-A

Coloring options:


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