J3_7AZY_025

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZY_025 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0833

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7AZY|1|E|A|1654
7AZY|1|E|G|1655
7AZY|1|E|A|1656
7AZY|1|E|C|1657
7AZY|1|E|G|1658
*
7AZY|1|E|C|1791
7AZY|1|E|C|1792
*
7AZY|1|E|G|1796
7AZY|1|E|A|1797
7AZY|1|E|A|1798
7AZY|1|E|A|1799
7AZY|1|E|A|1800
7AZY|1|E|U|1801

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L34-A

Chain U

60S ribosomal protein L43-A

Chain x

60S ribosomal protein L2-A