J3_7B5K_001

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B5K_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0897

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7B5K|1|A|G|30
7B5K|1|A|C|31
*
7B5K|1|A|G|474
7B5K|1|A|C|475
7B5K|1|A|G|476
7B5K|1|A|A|477
7B5K|1|A|A|478
7B5K|1|A|A|479
7B5K|1|A|A|480
7B5K|1|A|G|481
*
7B5K|1|A|C|509
7B5K|1|A|C|510

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24